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Extract from the Register of European Patents

EP About this file: EP1479780

EP1479780 - A novel design of probes for saccharomyces cerevisiae which minimizes cross-hybridization, the obtained probes and diagnostic uses thereof [Right-click to bookmark this link]
StatusThe application is deemed to be withdrawn
Status updated on  20.08.2010
Database last updated on 26.06.2024
Most recent event   Tooltip20.08.2010Application deemed to be withdrawnpublished on 22.09.2010  [2010/38]
Applicant(s)For all designated states
INSTITUT PASTEUR
25/28, rue du Docteur Roux
75015 Paris / FR
For all designated states
Université Pierre et Marie Curie
4 Place Jussieu
75252 Paris Cedex 05 / FR
[N/P]
Former [2004/48]For all designated states
INSTITUT PASTEUR
25/28, rue du Docteur Roux
75015 Paris / FR
For all designated states
UNIVERSITE PIERRE ET MARIE CURIE
4, place Jussieu
75252 Paris Cédex 05 / FR
Inventor(s)01 / Talla, Emmanuel
36, avenue de la Résistance
93100 Montreuil / FR
02 / Tekaia, Fredj
24, promenade du Pavé Lory
77600 Bussy Saint Georges / FR
03 / Dujon, Bernard
6, rue de la Gruerie
91190 Gif sur Yvette / FR
 [2004/48]
Representative(s)Van Malderen, Joëlle, et al
pronovem - Office Van Malderen
Avenue Josse Goffin 158
1082 Bruxelles / BE
[N/P]
Former [2004/48]Van Malderen, Joelle, et al
Office Van Malderen, Place Reine Fabiola 6/1
1083 Bruxelles / BE
Application number, filing date03447119.322.05.2003
[2004/48]
Filing languageEN
Procedural languageEN
PublicationType: A1 Application with search report 
No.:EP1479780
Date:24.11.2004
Language:EN
[2004/48]
Search report(s)(Supplementary) European search report - dispatched on:EP23.03.2004
ClassificationIPC:C12Q1/68
[2004/48]
CPC:
C12Q1/6895 (EP); C12Q1/6837 (EP); C12Q2600/158 (EP)
C-Set:
C12Q1/6837, C12Q2541/10 (EP)
Designated contracting statesAT,   BE,   BG,   CH,   CY,   CZ,   DE,   DK,   EE,   ES,   FI,   FR,   GB,   GR,   HU,   IE,   IT,   LI,   LU,   MC,   NL,   PT,   RO,   SE,   SI,   SK,   TR [2004/48]
TitleGerman:Neues Entwurfsverfahren für Saccharomyces Cerevisiae Sonden, welches die Kreuzhybridisierung minimiert, die erhaltenen Sonden, und deren diagnostische Verwendungen[2004/48]
English:A novel design of probes for saccharomyces cerevisiae which minimizes cross-hybridization, the obtained probes and diagnostic uses thereof[2004/48]
French:Nouveau procédé de conception de sondes pour saccharomyces cérévisiae minimisant l'hybridation croisée, les sondes obtenues, et leurs utilisations diagnostiques[2004/48]
Examination procedure23.05.2005Examination requested  [2005/29]
11.11.2005Despatch of a communication from the examining division (Time limit: M04)
12.01.2006Reply to a communication from the examining division
28.02.2006Despatch of a communication from the examining division (Time limit: M04)
11.07.2006Application deemed to be withdrawn, date of legal effect  [2010/38]
24.08.2006Reply to a communication from the examining division
23.04.2007Request for decision received: Request for further processing
05.03.2008Result of request for decision (Request for further processing): Request rejected
18.06.2009Despatch of communication that the application is deemed to be withdrawn, reason: renewal fee not paid in time  [2010/38]
Appeal following examination18.04.2008Appeal received No.  J0013/08
20.06.2008Statement of grounds filed
Divisional application(s)EP06116236.8   Application deemed to be withdrawn  : 29.07.2006
EP06121375.7   Application deemed to be withdrawn  : 27.09.2006
Request for further processing for:10.10.2006Request for further processing filed
10.10.2006Full payment received (date of receipt of payment)
Fees paidRenewal fee
30.05.2005Renewal fee patent year 03
30.05.2006Renewal fee patent year 04
Penalty fee
Additional fee for renewal fee
31.05.200705   M06   Not yet paid
31.05.200806   M06   Not yet paid
31.05.200907   M06   Not yet paid
31.05.201008   M06   Not yet paid
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Documents cited:Search[Y]EP0799897  (AFFYMETRIX INC [US]) [Y] 1-13,17 * page 8, line 55 - page 12, line 55 * * page 1 - page 4 *;
 [Y]WO0106013  (ROSETTA INPHARMATICS INC [US], et al) [Y] 1-13,17 * figure 1 *;
 [Y]WO0159151  (TM BIOSCIENCE CORP [CA], et al) [Y] 1-13,17 * page 16 - page 37 *;
 [X]  - XU DONG ET AL, "PRIMEGENS: Robust and efficient design of gene-specific probes for microarray analysis.", BIOINFORMATICS (OXFORD), (200211), vol. 18, no. 11, ISSN 1367-4803, pages 1432 - 1437, XP002260420 [X] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1093/bioinformatics/18.11.1432
 [X]  - TEN BOSCH JOHN ET AL, "Validation of sequence optimized 70 base pair oligonucleotides for use on DNA microarrays", INTERNATIONAL GENOME SEQUENCING AND ANALYSIS CONFERENCE, 12th International Genome Sequencing and Analysis Conference;Miami Beach, Florida, USA; September 12-15, 2000, (2000), vol. 12, page 88, XP002184313 [X] 1-13,17 * abstract *
 [X]  - LI FUGEN ET AL, "Selection of optimal DNA oligos for gene expression arrays", BIOINFORMATICS (OXFORD), (200111), vol. 17, no. 11, ISSN 1367-4803, pages 1067 - 1076, XP001062521 [X] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1093/bioinformatics/17.11.1067
 [DX]  - HUGHES T R ET AL, "Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer", NATURE BIOTECHNOLOGY, NATURE PUBLISHING, US, (200104), vol. 19, no. 4, ISSN 1087-0156, pages 342 - 347, XP002230790 [DX] 1-13,17 * Abstract. Experimental protocol, oligonucleotide selection. *

DOI:   http://dx.doi.org/10.1038/86730
 [DX]  - ROUILLARD JEAN-MARIE ET AL, "OligoArray: genome-scale oligonucleotide design for microarrays.", BIOINFORMATICS (OXFORD, ENGLAND) ENGLAND MAR 2002, (200203), vol. 18, no. 3, ISSN 1367-4803, pages 486 - 487, XP002260421 [DX] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1093/bioinformatics/18.3.486
 [DX]  - NIELSEN H B ET AL, "Avoiding cross hybridization by choosing nonredundant targets on cDNA arrays.", BIOINFORMATICS (OXFORD, ENGLAND) ENGLAND FEB 2002, (200202), vol. 18, no. 2, ISSN 1367-4803, pages 321 - 322, XP002260422 [DX] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1093/bioinformatics/18.2.321
 [Y]  - LASHKARI D A ET AL, "Yeast mmicroarrays for genome wide parallel genetic and gene expression analysis", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA, NATIONAL ACADEMY OF SCIENCE. WASHINGTON, US, (199711), vol. 94, ISSN 0027-8424, pages 13057 - 13062, XP002115013 [Y] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1073/pnas.94.24.13057
 [Y]  - CHO ET AL, "PARALLEL ANALYSIS OF GENETIC SELECTIONS USING WHOLE GENOME OLIGONUCLEOTIDE ARRAYS", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA, NATIONAL ACADEMY OF SCIENCE. WASHINGTON, US, (199803), vol. 95, ISSN 0027-8424, pages 3752 - 3757, XP002100299 [Y] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1073/pnas.95.7.3752
 [Y]  - TOMIUK S ET AL, "Microarray probe selection strategies.", BRIEFINGS IN BIOINFORMATICS ENGLAND DEC 2001, (200112), vol. 2, no. 4, ISSN 1467-5463, pages 329 - 340, XP002260423 [Y] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1093/bib/2.4.329
 [T]  - HAAS STEFAN A ET AL, "Genome-scale design of PCR primers and long oligomers for DNA microarrays.", NUCLEIC ACIDS RESEARCH. ENGLAND 1 OCT 2003, (20031001), vol. 31, no. 19, ISSN 1362-4962, pages 5576 - 5581, XP002260424 [T] 1-13,17 * the whole document *

DOI:   http://dx.doi.org/10.1093/nar/gkg752
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