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Extract from the Register of European Patents

EP About this file: EP3276516

EP3276516 - METHOD AND SYSTEM FOR IDENTIFICATION OF KEY DRIVER ORGANISMS FROM MICROBIOME / METAGENOMICS STUDIES [Right-click to bookmark this link]
StatusNo opposition filed within time limit
Status updated on  12.11.2021
Database last updated on 19.10.2024
FormerThe patent has been granted
Status updated on  04.12.2020
FormerGrant of patent is intended
Status updated on  21.07.2020
FormerExamination is in progress
Status updated on  11.07.2019
FormerRequest for examination was made
Status updated on  03.08.2018
FormerThe application has been published
Status updated on  29.12.2017
Most recent event   Tooltip13.09.2024Lapse of the patent in a contracting state
New state(s): MT		published on 16.10.2024  [2024/42]
Applicant(s)For all designated states
Tata Consultancy Services Limited
Nirmal Building, 9th Floor
Nariman Point
400021 Mumbai, Maharashtra / IN
[2020/34]
Former [2018/05]For all designated states
Tata Consultancy Services Limited
Nirmal Building 9th Floor Nariman Point Mumbai 400 021
Maharashtra / IN
Inventor(s)01 / MANDE, Sharmila Shekhar
Tata Consultancy Services Limited
Tata Research Development & Design Centre, 54-B
Hadapsar Industrial Estate, Hadapsar
411 013 Pune - Maharashtra / IN
02 / CHANDRAKAR, Pranjal
Tata Consultancy Services Limited
Tata Research Development & Design Centre, 54-B
Hadapsar Industrial Estate, Hadapsar
411 013 Pune - Maharashtra / IN
03 / BHUSAN, Kuntal Kumar
Tata Consultancy Services Limited
Tata Research Development & Design Centre, 54-B
Hadapsar Industrial Estate, Hadapsar
411 013 Pune - Maharashtra / IN
 [2018/05]
Representative(s)Goddar, Heinz J.
Boehmert & Boehmert
Anwaltspartnerschaft mbB
Pettenkoferstrasse 22
80336 München / DE
[2018/05]
Application number, filing date17164280.431.03.2017
[2018/05]
Priority number, dateIN20162102613830.07.2016         Original published format: IN201621026138
[2018/05]
Filing languageEN
Procedural languageEN
PublicationType: A1 Application with search report 
No.:EP3276516
Date:31.01.2018
Language:EN
[2018/05]
Type: B1 Patent specification 
No.:EP3276516
Date:06.01.2021
Language:EN
[2021/01]
Search report(s)(Supplementary) European search report - dispatched on:EP20.10.2017
ClassificationIPC:G16B40/00, G16H50/30, G16H50/20
[2020/29]
CPC:
G16B40/00 (EP,US); G16B25/10 (EP,US); C12Q1/689 (US);
G06F17/18 (US); G06F5/01 (US); G16B25/00 (US);
G16B5/00 (EP,US); G16H50/20 (EP,US); G16H50/30 (EP,US);
C12Q2600/158 (US); Y02A90/10 (EP) (-)
Former IPC [2018/05]G06F19/12
Designated contracting statesAL,   AT,   BE,   BG,   CH,   CY,   CZ,   DE,   DK,   EE,   ES,   FI,   FR,   GB,   GR,   HR,   HU,   IE,   IS,   IT,   LI,   LT,   LU,   LV,   MC,   MK,   MT,   NL,   NO,   PL,   PT,   RO,   RS,   SE,   SI,   SK,   SM,   TR [2018/36]
Former [2018/05]AL,  AT,  BE,  BG,  CH,  CY,  CZ,  DE,  DK,  EE,  ES,  FI,  FR,  GB,  GR,  HR,  HU,  IE,  IS,  IT,  LI,  LT,  LU,  LV,  MC,  MK,  MT,  NL,  NO,  PL,  PT,  RO,  RS,  SE,  SI,  SK,  SM,  TR 
TitleGerman:VERFAHREN UND SYSTEM ZUR IDENTIFIKATION VON TASTENTREIBERORGANISMEN VON MICROBIOM-/METAGENOMIKSTUDIEN[2018/05]
English:METHOD AND SYSTEM FOR IDENTIFICATION OF KEY DRIVER ORGANISMS FROM MICROBIOME / METAGENOMICS STUDIES[2018/05]
French:PROCÉDÉ ET SYSTÈME D'IDENTIFICATION DES PRINCIPAUX ORGANISMES D'ATTAQUE À PARTIR D'ÉTUDES MÉTAGÉNOMIQUES / DU MICROBIOME[2018/05]
Examination procedure31.03.2017Date on which the examining division has become responsible
31.07.2018Amendment by applicant (claims and/or description)
31.07.2018Examination requested  [2018/36]
15.07.2019Despatch of a communication from the examining division (Time limit: M02)
14.08.2019Reply to a communication from the examining division
22.07.2020Communication of intention to grant the patent
01.12.2020Fee for grant paid
01.12.2020Fee for publishing/printing paid
01.12.2020Receipt of the translation of the claim(s)
Opposition(s)07.10.2021No opposition filed within time limit [2021/50]
Fees paidRenewal fee
06.03.2019Renewal fee patent year 03
21.02.2020Renewal fee patent year 04
Opt-out from the exclusive  Tooltip
competence of the Unified
Patent Court		 See the Register of the Unified Patent Court for opt-out data
Responsibility for the accuracy, completeness or quality of the data displayed under the link provided lies entirely with the Unified Patent Court.
Lapses during opposition  TooltipHU31.03.2017
AL06.01.2021
AT06.01.2021
CY06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
MK06.01.2021
MT06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
TR06.01.2021
BE31.03.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
[2024/42]
Former [2024/29]HU31.03.2017
AL06.01.2021
AT06.01.2021
CY06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
MK06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
TR06.01.2021
BE31.03.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2024/22]HU31.03.2017
AL06.01.2021
AT06.01.2021
CY06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
MK06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
BE31.03.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2023/33]HU31.03.2017
AL06.01.2021
AT06.01.2021
CY06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
BE31.03.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2023/30]AL06.01.2021
AT06.01.2021
CY06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
BE31.03.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2022/34]AL06.01.2021
AT06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
BE31.03.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2022/23]AL06.01.2021
AT06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
IT06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2022/13]AL06.01.2021
AT06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SI06.01.2021
SK06.01.2021
SM06.01.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
PT06.05.2021
Former [2022/10]AL06.01.2021
AT06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SK06.01.2021
SM06.01.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
PT06.05.2021
Former [2022/08]AL06.01.2021
AT06.01.2021
CZ06.01.2021
EE06.01.2021
ES06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SK06.01.2021
SM06.01.2021
IE31.03.2021
LU31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2022/07]AL06.01.2021
AT06.01.2021
CZ06.01.2021
EE06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SK06.01.2021
SM06.01.2021
IE31.03.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2021/50]AT06.01.2021
CZ06.01.2021
EE06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RO06.01.2021
RS06.01.2021
SK06.01.2021
SM06.01.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2021/48]AT06.01.2021
CZ06.01.2021
EE06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RS06.01.2021
SM06.01.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2021/46]AT06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RS06.01.2021
SM06.01.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2021/45]AT06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
MC06.01.2021
PL06.01.2021
RS06.01.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2021/42]AT06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
PL06.01.2021
RS06.01.2021
BG06.04.2021
GR07.04.2021
IS06.05.2021
PT06.05.2021
Former [2021/39]AT06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
PL06.01.2021
RS06.01.2021
BG06.04.2021
GR07.04.2021
PT06.05.2021
Former [2021/37]AT06.01.2021
FI06.01.2021
HR06.01.2021
LT06.01.2021
LV06.01.2021
RS06.01.2021
BG06.04.2021
GR07.04.2021
PT06.05.2021
Former [2021/36]FI06.01.2021
HR06.01.2021
LT06.01.2021
BG06.04.2021
GR07.04.2021
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HR06.01.2021
LT06.01.2021
PT06.05.2021
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PT06.05.2021
Documents cited:Search[I]US2007174019  (VAILAYA ADITYA [US], et al) [I] 1* the whole document *;
 [I]US2014207385  (MARTIN FLORIAN [CH], et al) [I] 1 * the whole document *;
 [I]CA2936933  (UBIOME INC [US]) [I] 1-13 * claim All *;
 [A]  - DMITRY PROKOPENKO ET AL, "Utilizing the Jaccard index to reveal population stratification in sequencing data: a simulation study and an application to the 1000 Genomes Project", BIOINFORMATICS., GB, (20160501), vol. 32, no. 9, doi:10.1093/bioinformatics/btv752, ISSN 1367-4803, pages 1366 - 1372, XP055412451 [A] 1-13 * the whole document *

DOI:   http://dx.doi.org/10.1093/bioinformatics/btv752
 [A]  - SARI PEURA ET AL, "Resistant Microbial Cooccurrence Patterns Inferred by Network Topology", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, (20150315), vol. 81, no. 6, doi:10.1128/AEM.03660-14, ISSN 0099-2240, pages 2090 - 2097, XP055412487 [A] 1-13 * the whole document *

DOI:   http://dx.doi.org/10.1128/AEM.03660-14
 [A]  - CARDONA CESAR ET AL, "Network-based metabolic analysis and microbial community modeling", CURRENT OPINION IN MICROBIOLOGY, (20160406), vol. 31, doi:10.1016/J.MIB.2016.03.008, ISSN 1369-5274, pages 124 - 131, XP029571919 [A] 1-13 * the whole document *

DOI:   http://dx.doi.org/10.1016/j.mib.2016.03.008
 [A]  - QI LV ET AL, "Regulatory network rewiring for secondary metabolism in Arabidopsis thaliana under various conditions", BMC PLANT BIOLOGY, BIOMED CENTRAL, LONDON, GB, (20140704), vol. 14, no. 1, doi:10.1186/1471-2229-14-180, ISSN 1471-2229, page 180, XP021194322 [A] 1-13 * the whole document *

DOI:   http://dx.doi.org/10.1186/1471-2229-14-180
by applicant   - LOZUPONE, C.; COTA-GOMEZ, A.; PALMER, B. E.; LINDERMAN, D. J.; CHARLSON, E. S.; SODERGREN, E. ET AL., "Widespread Colonization of the Lung by Tropheryma whipplei in HIV Infection", AM J RESPIR CRIT CARE MED, (2013), vol. 187, pages 1110 - 1117
    - PAULSON, J. N.; STINE, O. C.; BRAVO, H. C.; POP, M, "Differential abundance analysis for microbial marker-gene surveys", NAT. METHODS, (2013), vol. 10, pages 1200 - 1202
    - FAUST, K.; SATHIRAPONGSASUTI, J. F.; IZARD, J.; SEGATA, N.; GEVERS, D.; RAES, J. ET AL., "Microbial Co-occurrence Relationships in the Human Microbiome", PLOS COMPUT BIOL, (2012), vol. 8, page E1002606
The EPO accepts no responsibility for the accuracy of data originating from other authorities; in particular, it does not guarantee that it is complete, up to date or fit for specific purposes.