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EP About this file: EP2133807

EP2133807 - HOMOLOGOUS SEARCH SYSTEM [Right-click to bookmark this link]
Status	The application has been withdrawn Status updated on 21.12.2012 Database last updated on 02.11.2024
Most recent event Tooltip	21.12.2012	Withdrawal of application	published on 23.01.2013 [2013/04]
Applicant(s)	For all designated states Research Organization Of Information And Systems 10-3, Midori-cho Tachikawa-shi Tokyo 190-0014 / JP
	[2010/05]
Former [2009/51]	For all designated states Research Organization Of Information And Systems 6-7, Minamiazabu 4-chome Minato-ku Tokyo 1068569 / JP
Inventor(s)	01 / GOJOBORI, Takashi c/o National Institute of Genetics Research Organisation of Information and Systems, Yata 1111 Mishima-shi Shizuola 411-8540 / JP
	02 / IKEO, Kazuho c/o National Institute of Genetics Research Organisation of Information and Systems Yata 1111 Mishima-shi Shizuoka 411-8540 / JP
	03 / OKAYAMA, Toshitsugu c/o BITS Co., Ltd. A402, Sanko Building, 20-3 Shimotogar Nagaizumi-cho Sunto-gun Shizuoka 411-0943 / JP
	[2010/04]
Representative(s)	Jackson, Martin Peter J A Kemp 14 South Square Gray's Inn London WC1R 5JJ / GB
	[N/P]
Former [2009/51]	Jackson, Martin Peter J.A. Kemp & Co. 14 South Square Gray's Inn London WC1R 5JJ / GB
Application number, filing date	08721067.0	29.02.2008
	[2009/51]
	WO2008JP53647
Priority number, date	JP20070052583	02.03.2007 Original published format: JP 2007052583
	[2009/51]
Filing language	JA
Procedural language	EN
Publication	Type:	A1 Application with search report
	No.:	WO2008108297
	Date:	12.09.2008
	Language:	JA
	[2008/37]
	Type:	A1 Application with search report
	No.:	EP2133807
	Date:	16.12.2009
	Language:	EN
	[2009/51]
Search report(s)	International search report - published on:	JP	12.09.2008
	(Supplementary) European search report - dispatched on:	EP	16.11.2010
Classification	IPC:	G06F19/00, G06F17/30	[2009/51]
	CPC:	G06F16/90344 (EP,US); G16B30/10 (EP,US); G16B30/00 (EP,US)
Designated contracting states	AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LI, LT, LU, LV, MC, MT, NL, NO, PL, PT, RO, SE, SI, SK, TR [2009/51]
Title	German:	HOMOLOGES SUCHSYSTEM	[2009/51]
	English:	HOMOLOGOUS SEARCH SYSTEM	[2009/51]
	French:	SYSTÈME DE RECHERCHE D'HOMOLOGUE	[2009/51]
Entry into regional phase	29.09.2009	Translation filed
	29.09.2009	National basic fee paid
	29.09.2009	Search fee paid
	29.09.2009	Designation fee(s) paid
	29.09.2009	Examination fee paid
Examination procedure	29.09.2009	Examination requested [2009/51]
	07.06.2011	Amendment by applicant (claims and/or description)
	28.11.2012	Application withdrawn by applicant [2013/04]
Fees paid	Renewal fee
	16.02.2010	Renewal fee patent year 03
	15.02.2011	Renewal fee patent year 04
	15.02.2012	Renewal fee patent year 05
Opt-out from the exclusive Tooltip competence of the Unified Patent Court	See the Register of the Unified Patent Court for opt-out data
	Responsibility for the accuracy, completeness or quality of the data displayed under the link provided lies entirely with the Unified Patent Court.
Documents cited:	Search	[I] - MAKINEN V ET AL, "Approximate matching of run-length compressed strings", ALGORITHMICA SPRINGER-VERLAG USA, (200304), vol. 35, no. 4, ISSN 0178-4617, pages 347 - 369, XP002607674 [I] 1-15 * abstract * * page 347, paragraph 1 - page 348, paragraph 1 * * page 350, paragraph 2 - page 351, paragraph 2 * * page 359, paragraph 1 - page 360, paragraph 2 * DOI: http://dx.doi.org/10.1007/S00453-002-1005-2
		[A] - FRESCHI V ET AL, "Longest common subsequence between run-length-encoded strings: a new algorithm with improved parallelism", INFORMATION PROCESSING LETTERS ELSEVIER NETHERLANDS, (20040531), vol. 90, no. 4, ISSN 0020-0190, pages 167 - 173, XP002607675 [A] 1-15 * the whole document * DOI: http://dx.doi.org/10.1016/J.IPL.2004.02.011
		[A] - LEI CHEN ET AL, "Compressed pattern matching in DNA sequences", COMPUTATIONAL SYSTEMS BIOINFORMATICS CONFERENCE, 2004. CSB 2004. PROCE EDINGS. 2004 IEEE STANFORD, CA, USA 16-19 AUG. 2004, PISCATAWAY, NJ, USA,IEEE, (20040816), ISBN 978-0-7695-2194-7, pages 59 - 65, XP010727066 [A] 1-15 * the whole document *
		[A] - NING Z, "SSAHA: a fast search method for large DNA databases", GENOME RESEARCH, COLD SPRING HARBOR LABORATORY PRESS, WOODBURY, NY, US LNKD- DOI:10.1101/GR.194201, (20011001), vol. 11, no. 10, ISSN 1088-9051, pages 1725 - 1729, XP002983796 [A] 8 * abstract * * page 1725, column l, paragraph 1 - page 1727, column l, paragraph 1 * DOI: http://dx.doi.org/10.1101/gr.194201
	International search	[A]JP2003188735 (NTT DATA CORP, et al) [A] 1-22* , Full text; all drawings (Family: none) *;
		[A]JP2006163734 (DAINIPPON PRINTING CO LTD) [A] 1-22 * , Full text; all drawings (Family: none) *;
		[A] - FRESCHI, V., "Using sequence compression to speedup probabilistic profile matching", Bioinformatics, (20050515), vol. 21, no. 10, pages 2225 - 9, XP008117730 [A] 1-22 DOI: http://dx.doi.org/10.1093/bioinformatics/bti323
		[A] - MATSUMOTO, T., "Biological sequence compression algorithms", Genome Inform. Ser. Workshop Genome Inform., (20000000), vol. 11, pages 43 - 52, XP008023975 [A] 1-22
	by applicant	JPH0793370
		- ALTSCHUL S. F. ET AL., "Basic local alignment search tool", J. MOL. BIOL., (1990), vol. 215, doi:doi:10.1006/jmbi.1990.9999, pages 403 - 410, XP002949123 DOI: http://dx.doi.org/10.1006/jmbi.1990.9999
		- SMITH TF; WATERMAN MS, "Comparison of biosequences", ADV. APPL. MATH., (1981), vol. 2, doi:doi:10.1016/0196-8858(81)90046-4, pages 482 - 9, XP000869556 DOI: http://dx.doi.org/10.1016/0196-8858(81)90046-4
		- "The Art of Computer Programming", DONALD KNUTH, Sorting and Searching, (1998), vol. 3, pages 513 - 558
		- DONALD KNUTH, Fundamental Algorithms, ADDISON-WESLEY, (1997), pages 318 - 348
		- R. BAYER; E. MCCREIGHT, "Organization and Maintenance of Large Ordered Indexes", ACTA INFORMATICA, (1972), vol. 1

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