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EP About this file: EP2320343

EP2320343 - System and process for validating, aligning and reordering one or more genetic sequence maps using at least one ordered restriction map [Right-click to bookmark this link]
Status	The application is deemed to be withdrawn Status updated on 26.07.2019 Database last updated on 03.10.2024
Former	Grant of patent is intended Status updated on 23.10.2018
Former	Examination is in progress Status updated on 09.12.2016
Most recent event Tooltip	26.07.2019	Application deemed to be withdrawn	published on 28.08.2019 [2019/35]
Applicant(s)	For all designated states WISCONSIN ALUMNI RESEARCH FOUNDATION 614 North Walnut Street Madison, WI 53705-7365 / US
	[2011/19]
Inventor(s)	01 / Antoniotti, Marco 298 2nd Street, Apt. 1L Jersey City, NJ 07302 / US
	02 / Mishra, Bhubaneswar 16 Dunster Road Great Neck, NY NY 11021 / US
	03 / Anantharaman, Thomas 208 park Avenue Apt 308 Gaithersburg, Maryland 20877 / US
	04 / Paxia, Salvatore 300 West 55th Street, Apt 16J New York, NY NY 10019 / US
	05 / Schwartz, David c 3110 Oxford Rd Madison, WI 53705 / US
	[N/P]
Former [2011/19]	01 / Antoniotti, Marco 298 2nd Street, Apt. 1L Jersey City, NJ NJ 07302 / US
	02 / Mishra, Bhubaneswar 16 Dunster Road Great Neck, NY NY 11021 / US
	03 / Anantharaman, Thomas 208 park Avenue Apt 308 Gaithersburg, Maryland 20877 / US
	04 / Paxia, Salvatore 300 West 55th Street, Apt 16J New York, NY NY 10019 / US
	05 / Schwartz, David c 3110 Oxford Rd Madison, WI 53705 / US
Representative(s)	Barker Brettell LLP 100 Hagley Road Edgbaston Birmingham B16 8QQ / GB
	[N/P]
Former [2011/19]	Gosnall, Toby, et al Barker Brettell LLP 100 Hagley Road Edgbaston Birmingham B16 8QQ / GB
Application number, filing date	10184566.7	28.09.2001
	[2011/19]
Priority number, date	US20000236296P	28.09.2000 Original published format: US 236296 P
	US20010293254P	24.05.2001 Original published format: US 293254 P
	[2011/19]
Filing language	EN
Procedural language	EN
Publication	Type:	A2 Application without search report
	No.:	EP2320343
	Date:	11.05.2011
	Language:	EN
	[2011/19]
	Type:	A3 Search report
	No.:	EP2320343
	Date:	22.06.2011
	[2011/25]
Search report(s)	(Supplementary) European search report - dispatched on:	EP	23.05.2011
Classification	IPC:	G06F19/22	[2011/19]
	CPC:	G16B30/00 (EP,US); G16B30/10 (EP,US)
Designated contracting states	AT, BE, CH, CY, DE, DK, ES, FI, FR, GB, GR, IE, IT, LI, LU, MC, NL, PT, SE, TR [2011/19]
Title	German:	System und Verfahren zur Validierung, Ausrichtung und Neuplanung einer oder mehr genetischer Sequenzkarten mit mindestens einem Restriktionsplan	[2011/19]
	English:	System and process for validating, aligning and reordering one or more genetic sequence maps using at least one ordered restriction map	[2011/19]
	French:	Système et procédé pour la validation, l'alignement et la réorganisation d'une ou plusieurs cartes de séquences génétiques au moyen d'au moins une carte de restriction ordonnée	[2011/19]
Examination procedure	23.09.2011	Examination requested [2011/44]
	22.12.2011	Amendment by applicant (claims and/or description)
	03.04.2012	Despatch of a communication from the examining division (Time limit: M06)
	10.10.2012	Reply to a communication from the examining division
	30.11.2016	Despatch of a communication from the examining division (Time limit: M06)
	30.05.2017	Reply to a communication from the examining division
	24.10.2018	Communication of intention to grant the patent
	05.03.2019	Application deemed to be withdrawn, date of legal effect [2019/35]
	10.04.2019	Despatch of communication that the application is deemed to be withdrawn, reason: fee for grant / fee for printing not paid in time [2019/35]
Parent application(s) Tooltip	EP01975549.5 / EP1328805
Divisional application(s)	The date of the Examining Division's first communication in respect of the earliest application for which a communication has been issued (EP20010975549) is 17.03.2008
Fees paid	Renewal fee
	29.11.2010	Renewal fee patent year 03
	29.11.2010	Renewal fee patent year 04
	29.11.2010	Renewal fee patent year 05
	29.11.2010	Renewal fee patent year 06
	29.11.2010	Renewal fee patent year 07
	29.11.2010	Renewal fee patent year 08
	29.11.2010	Renewal fee patent year 09
	29.11.2010	Renewal fee patent year 10
	29.09.2011	Renewal fee patent year 11
	12.09.2012	Renewal fee patent year 12
	12.09.2013	Renewal fee patent year 13
	12.09.2014	Renewal fee patent year 14
	11.09.2015	Renewal fee patent year 15
	13.09.2016	Renewal fee patent year 16
	12.09.2017	Renewal fee patent year 17
	11.09.2018	Renewal fee patent year 18
Opt-out from the exclusive Tooltip competence of the Unified Patent Court	See the Register of the Unified Patent Court for opt-out data
	Responsibility for the accuracy, completeness or quality of the data displayed under the link provided lies entirely with the Unified Patent Court.
Documents cited:	Search	[I] - ASTON C ET AL, "Optical mapping and its potential for large-scale sequencing projects", TRENDS IN BIOTECHNOLOGY, ELSEVIER PUBLICATIONS, CAMBRIDGE, GB, vol. 17, no. 7, doi:10.1016/S0167-7799(99)01326-8, ISSN 0167-7799, (19990701), pages 297 - 302, URL: http://www.sciencedirect.com/science?_ob=MImg&_imagekey=B6TCW-3WT2NNJ-9-1&_cdi=5181&_user=987766&_pii=S0167779999013268&_origin=gateway&_coverDate=07%2F01%2F1999&_sk=999829992&view=c&wchp=dGLbVlW-zSkzS&md5=8c76c07e3669d6003ea7d8179ab92e81&ie=/sdarticle.pdf, (20110517), XP004169729 [I] 1-15 * the whole document * DOI: http://dx.doi.org/10.1016/S0167-7799(99)01326-8
		[T] - ANTONIOTTI M ET AL, "Genomics via Optical Mapping IV: Sequence Validation via Optical Map Matching", INTERNET CITATION, (200103), URL: http://cs.nyu.edu/web/Research/TechReports/TR2000-811/TR2000-811.pdf, (20070101), XP002433390 [T] 1-15 * the whole document *
		[AP] - PLAJZER-FRICK I ET AL, "Optical mapping as a tool for sequence validation in genomic sequencing", BIOSIS, BIOSCIENCES INFORMATION SERVICE, PHILADELPHIA, PA, US, (20000915), Database accession no. PREV200100519216, URL: BIOSIS, XP002433393 [AP] 1-15 * the whole document *
		[A] - ROUCHKA E C ET AL, "Sequence Assembly Validation by Restriction Digest Fingerprint Comparison", INTERNET CITATION, (1997), URL: http://citeseerx.ist.psu.edu/viewdoc/download;jsessionid=B03983AE2247BFFFD7756CA0BCACF583?doi=10.1.1.27.647&rep=rep1&type=pdf, (20070511), XP002433391 [A] 1-15 * the whole document *
		[A] - SCHWARTZ D C ET AL, "ORDERED RESTRICTION MAPS OF SACCHAROMYCES CEREVISIAE CHROMOSOMES CONSTRUCTED BY OPTICAL MAPPING", SCIENCE, AMERICAN ASSOCIATION FOR THE ADVANCEMENT OF SCIENCE, WASHINGTON, DC; US, (19931001), vol. 262, no. 5130, doi:10.1126/SCIENCE.8211116, ISSN 0036-8075, pages 110 - 114, XP002258437 [A] 1-15 * the whole document * DOI: http://dx.doi.org/10.1126/science.8211116
	by applicant	US6174671
		- E.W. MYERS ET AL., "An O(N2 lg N) Restriction Map Comparison and Search Algorithm", BULLETIN OF MATHEMATICAL BIOLOGY, (1992), vol. 54, no. 4, pages 599 - 618, XP055489609
		- "A Uniform Framework for Ordered Restriction Map Problems", PARIDA, L., Journal of Computational Biology, MARY ANN LIEBERT INC. PUBLISHERS, (1998), vol. 5, pages 725 - 739
		- LEE, J.K.; DANCIK, V.; M.S.WATERMAN, "Estimation for restriction sites observed by optical mapping using reversible-jump Markov Chain Monte Carlo", J. COMP. BIOL., (1997), vol. 5, pages 505 - 516
		- T. ALLANTHARAMAN ET AL., "Genomics via Optical Mapping II: Ordered Restriction Maps", JOURNAL OF COMPUTATIONAL BIOLOGY, (1997), vol. 4, no. 2, pages 91 - 118
		- "Genomics via Optical Mapping III: Contiging Genomic DNA and Variations", T. ANANTHARAMAN ET AL., 7th International Conference on Intelligent Systems for Molecular Biology, AAAI PRESS, (1999), vol. 7, pages 18 - 27
		- J. JING ET AL., "Optical Mapping of Plasmodium Falciparum Chromosome 2", GENOME RESEARCH, (1999), vol. 9, pages 175 - 181
		- Z. LAI ET AL., "A shotgun optical map of the entire Plasmodium Fa1ciparum genome", NATURE GENETICS, (1999), vol. 23, doi:doi:10.1038/15484, pages 309 - 313, XP008122563 DOI: http://dx.doi.org/10.1038/15484
		- M. J. GARDNER ET AL., "Chromosome 2 sequence of the human malaria parasite Plasmodium Falciparum", SCIENCE, (1998), vol. 282, doi:doi:10.1126/science.282.5391.1126, pages 1126 - 1132, XP002907181 DOI: http://dx.doi.org/10.1126/science.282.5391.1126

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