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Extract from the Register of European Patents

EP About this file: EP3455236

EP3455236 - COMPUTATIONAL METHOD FOR CLASSIFYING AND PREDICTING PROTEIN SIDE CHAIN CONFORMATIONS [Right-click to bookmark this link]
Status	The application is deemed to be withdrawn Status updated on 05.03.2021 Database last updated on 06.11.2024
Former	Request for examination was made Status updated on 15.02.2019
Former	The international publication has been made Status updated on 17.11.2017
Most recent event Tooltip	05.03.2021	Application deemed to be withdrawn	published on 07.04.2021 [2021/14]
Applicant(s)	For all designated states Accutar Biotechnology Inc. 760 Parkside Avenue Room 213 Brooklyn, NY 11226 / US
	[2019/12]
Inventor(s)	01 / FAN, Jie 235 East 55th Street Apt 42a New York, NY 10022 / US
	02 / LIU, Ke 1189 Wuzhong Road Minghang District Debiyiyuan Room 846 Shanghai 201103 / CN
	[2019/21]
Former [2019/12]	01 / FAN, Jie 400 East 66th Street Apt 16b New York, NY 10065 / US
	02 / LIU, Ke 1189 Wuzhong Road Minghang District Debiyiyuan Room 846 Shanghai 201103 / CN
Representative(s)	Finnegan Europe LLP 1 London Bridge London SE1 9BG / GB
	[2019/12]
Application number, filing date	17796752.8	10.05.2017
	[2019/12]
	WO2017US31934
Priority number, date	US201662334173P	10.05.2016 Original published format: US 201662334173 P
	US201662357634P	01.07.2016 Original published format: US 201662357634 P
	US201762475328P	23.03.2017 Original published format: US 201762475328 P
	[2019/12]
Filing language	EN
Procedural language	EN
Publication	Type:	A1 Application with search report
	No.:	WO2017196963
	Date:	16.11.2017
	Language:	EN
	[2017/46]
	Type:	A1 Application with search report
	No.:	EP3455236
	Date:	20.03.2019
	Language:	EN
	The application published by WIPO in one of the EPO official languages on 16.11.2017 takes the place of the publication of the European patent application.
	[2019/12]
Search report(s)	International search report - published on:	US	16.11.2017
	(Supplementary) European search report - dispatched on:	EP	26.03.2020
Classification	IPC:	G16B15/20, G16B15/30, G16B40/00, G06F17/50, G06T17/00, G06N20/00	[2020/01]
	CPC:	G06N20/00 (EP,US); G16B15/00 (EP,US); G06F30/20 (US); G16B15/20 (EP); G16B15/30 (EP); G16B40/00 (EP,US); (+) G16B40/20 (EP,US); G16B40/30 (EP,US); G16B50/00 (US); G16B50/10 (EP,US); G16B50/30 (EP,US) (-)
	Former IPC [2019/12]	C07K1/00, G06F17/50, G06F19/10, G06F19/16, G06F19/22
Designated contracting states	AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LI, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR [2019/12]
Extension states	BA	07.12.2018
	ME	07.12.2018
Validation states	MA	07.12.2018
	MD	07.12.2018
Title	German:	COMPUTERGESTÜTZTES VERFAHREN ZUR KLASSIFIZIERUNG UND VORHERSAGE VON PROTEINSEITENKETTENKONFORMATIONEN	[2019/12]
	English:	COMPUTATIONAL METHOD FOR CLASSIFYING AND PREDICTING PROTEIN SIDE CHAIN CONFORMATIONS	[2019/12]
	French:	PROCÉDÉ DE CALCUL DESTINÉ À CLASSIFIER ET PRÉDIRE DES CONFORMATIONS DE CHAÎNE LATÉRALE PROTÉIQUE	[2019/12]
Entry into regional phase	07.12.2018	National basic fee paid
	07.12.2018	Search fee paid
	07.12.2018	Designation fee(s) paid
	07.12.2018	Examination fee paid
Examination procedure	deleted	Date on which the examining division has become responsible
	07.12.2018	Examination requested [2019/12]
	15.07.2019	Amendment by applicant (claims and/or description)
	27.10.2020	Application deemed to be withdrawn, date of legal effect [2021/14]
	17.11.2020	Despatch of communication that the application is deemed to be withdrawn, reason: reply to the communication from the examining division not received in time [2021/14]
Fees paid	Renewal fee
	28.06.2019	Renewal fee patent year 03
	31.03.2020	Renewal fee patent year 04
	Penalty fee
	Additional fee for renewal fee
	31.05.2019	03 M06 Fee paid on 28.06.2019
Opt-out from the exclusive Tooltip competence of the Unified Patent Court	See the Register of the Unified Patent Court for opt-out data
	Responsibility for the accuracy, completeness or quality of the data displayed under the link provided lies entirely with the Unified Patent Court.
Documents cited:	Search	[X]WO2016005969 (YEDA RES & DEV [IL]) [X] 1,2,6,7 * abstract * * p.6 l.9-p.8 l.2, p.13 l.23-28, p.15 l.1-6, p.19 par.3-p.20 par.1;; figure 1 * * p.68-69, section "Backbone segment clustering" * * p.85, section "Generating the antibody conformation representatives" *;
		[XI] - SCHUELER-FURMAN O ET AL, "Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes", FOLDING & DESIGN / STRUCTURE, CELL PRESS, (19980101), vol. 3, no. 6, doi:10.1016/S1359-0278(98)00070-4, ISSN 1359-0278, pages 549 - 564, XP002317413 [X] 1,4-7 * abstract * * p.562, section "Rotamer libraries" * * p.551 col.1 par.2, p.562 col.2 * [I] 3 DOI: http://dx.doi.org/10.1016/S1359-0278(98)00070-4
		[X] - BADRINARAYAN P ET AL, "Virtual screening filters for the design of type II p38 MAP kinase inhibitors: A fragment based library generation approach", JOURNAL OF MOLECULAR GRAPHICS AND MODELLING, ELSEVIER SCIENCE, NEW YORK, NY, US, vol. 34, doi:10.1016/J.JMGM.2011.12.009, ISSN 1093-3263, (20111227), pages 89 - 100, (20120103), XP028460422 [X] 1,2,6,7 * abstract * * p.92-94, sections 5 to 5.1;; figures 4-5 * * p.91 section 3 * DOI: http://dx.doi.org/10.1016/j.jmgm.2011.12.009
		[A] - LI S C ET AL, "Clustering 100,000 Protein Structure Decoys in Minutes", IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, IEEE SERVICE CENTER, NEW YORK, NY, US, (20120501), vol. 9, no. 3, doi:10.1109/TCBB.2011.142, ISSN 1545-5963, pages 765 - 773, XP011492359 [A] 1-7 * the whole document * DOI: http://dx.doi.org/10.1109/TCBB.2011.142
		[A] - KELLEY L A ET AL, "An automated approach for clustering an ensemble of NMR-derived protein structures into conformationally related subfamilies", PROTEIN ENGINEERING, DESIGN AND SELECTION, GB, (19960101), vol. 9, no. 11, doi:10.1093/protein/9.11.1063, ISSN 1741-0126, pages 1063 - 1065, XP055643575 [A] 1-7 * p.1063 col.1 par.1-col.2 par.2 * DOI: http://dx.doi.org/10.1093/protein/9.11.1063
	International search	[A]US6185506 (CRAMER RICHARD D [US], et al) [A] 1-11 * entire document *;
		[XY]US2004015299 (HEFTI JOHN [US], et al) [X] 1, 2, 4, 8-11 * entire document * [Y] 3, 5-7;
		[Y]US7146277 (PRESTEGARD JAMES H [US], et al) [Y] 5-7 * entire document *;
		[A]US2008167194 (DAHIYAT BASSIL I [US], et al) [A] 1-11 * entire document *;
		[A]US2009155254 (GEBBINK MARTIJN FRANS BEN GERARD [NL], et al) [A] 1-11 * entire document *;
		[A]US7672791 (HORN HANS WERNER [US], et al) [A] 1-11 * entire document *;
		[A]US2011098238 (SKOLNICK JEFFREY [US], et al) [A] 1-11 * entire document *;
		[A]US2011112818 (GODDARD III WILLIAM A [US], et al) [A] 1-11 * entire document *;
		[A]US2012095743 (FLOHIL JACOB ARY [NL]) [A] 1-11 * entire document *;
		[A]US2013071837 (WINTERS-HILT STEPHEN N [US], et al) [A] 1-11* entire document *;
		[Y]WO2015173803 (OFEK ESHKOLOT RES AND DEV LTD [IL]) [Y] 3 * entire document *;
		[A] - CHEN et al., "On evaluating molecular-docking methods for pose prediction and enrichment factors", J. Chem. Inf. Model, (20050000), pages 401 - 41 5, URL: https://www.researchgate.net/profile/Hongming-Chen/publication/7346918:-On_Evaluating-Molecular-Docking_Methods_for_Pose_Prediction_and_Enrichment_Factors/links/09e4150619522ca2ce000000.pdf, (20170806), XP055437921 [A] 1-11 * . entire document * DOI: http://dx.doi.org/10.1021/ci0503255

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