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Extract from the Register of European Patents

EP About this file: EP4103580

EP4103580 - METAGENOMIC LIBRARY AND NATURAL PRODUCT DISCOVERY PLATFORM [Right-click to bookmark this link]
StatusRequest for examination was made
Status updated on  18.11.2022
Database last updated on 26.07.2024
FormerThe international publication has been made
Status updated on  20.08.2021
Most recent event   Tooltip05.04.2024New entry: Additional fee for renewal fee: despatch of communication + time limit 
Applicant(s)For all designated states
Zymergen Inc.
5980 Horton Street, Suite 105
Emeryville, CA 94608 / US
[2022/51]
Inventor(s)01 / LIU, Oliver
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
02 / AKIVA, Eyal
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
03 / EYLES, Tom Hayon
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
04 / GALM, Ute
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
05 / GANESH, Sangita
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
06 / HENDRIX, Stephanie Leanne Brown
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
07 / HWANG, William W.
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
08 / KIM, Jeffrey Hoon
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
09 / NECKELMANN, Alexander
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
10 / OTENG-PABI, Samuel
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
11 / PELIKAN, Claus
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
12 / SCANNELL, Devin
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
13 / SERBER, Zachariah
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
14 / SHOCK, Jennifer
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
15 / SNEDDON, Michael W.
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
16 / YANG, Xiao
c/o Zymergen Inc. 5980 Horton Street, Suite 105
Emeryville, California 94608 / US
 [2022/51]
Representative(s)Cooley (UK) LLP
22 Bishopsgate
London EC2N 4BQ / GB
[2022/51]
Application number, filing date21754454.312.02.2021
[2022/51]
WO2021US18050
Priority number, dateUS202062976194P13.02.2020         Original published format: US 202062976194 P
US202062976198P13.02.2020         Original published format: US 202062976198 P
US202062976201P13.02.2020         Original published format: US 202062976201 P
[2022/51]
Filing languageEN
Procedural languageEN
PublicationType: A1 Application with search report
No.:WO2021163637
Date:19.08.2021
Language:EN
[2021/33]
Type: A1 Application with search report 
No.:EP4103580
Date:21.12.2022
Language:EN
The application published by WIPO in one of the EPO official languages on 19.08.2021 takes the place of the publication of the European patent application.
[2022/51]
Search report(s)International search report - published on:US19.08.2021
(Supplementary) European search report - dispatched on:EP07.02.2024
ClassificationIPC:G16B35/20, C07K1/00, C12N15/09, C12N15/10, C40B60/14
[2024/10]
CPC:
G16B35/10 (EP,IL,US); G16B35/20 (EP,IL,US); G06N20/00 (EP,IL);
G06N3/02 (IL,US); G06N3/08 (EP,IL); G06N3/123 (IL,US);
G06N7/01 (EP,IL); G16B30/00 (IL,US); G16B30/10 (EP,IL);
G16B40/20 (EP,IL); G16B5/00 (IL,US) (-)
Former IPC [2022/51]C07K1/00, C12N15/09, C12N15/10, C40B60/14
Designated contracting statesAL,   AT,   BE,   BG,   CH,   CY,   CZ,   DE,   DK,   EE,   ES,   FI,   FR,   GB,   GR,   HR,   HU,   IE,   IS,   IT,   LI,   LT,   LU,   LV,   MC,   MK,   MT,   NL,   NO,   PL,   PT,   RO,   RS,   SE,   SI,   SK,   SM,   TR [2022/51]
TitleGerman:METAGENOM-BIBLIOTHEK UND PLATTFORM ZUR ENTDECKUNG NATÜRLICHER PRODUKTE[2022/51]
English:METAGENOMIC LIBRARY AND NATURAL PRODUCT DISCOVERY PLATFORM[2022/51]
French:BIBLIOTHÈQUE MÉTAGÉNOMIQUE ET PLATEFORME DE DÉCOUVERTE DE PRODUIT NATUREL[2022/51]
Entry into regional phase08.09.2022National basic fee paid 
08.09.2022Search fee paid 
08.09.2022Designation fee(s) paid 
08.09.2022Examination fee paid 
Examination procedure08.09.2022Examination requested  [2022/51]
24.03.2023Amendment by applicant (claims and/or description)
Fees paidRenewal fee
27.02.2023Renewal fee patent year 03
Penalty fee
Additional fee for renewal fee
29.02.202404   M06   Not yet paid
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See the Register of the Unified Patent Court for opt-out data
Responsibility for the accuracy, completeness or quality of the data displayed under the link provided lies entirely with the Unified Patent Court.
Documents cited:Search[I]  - HANNIGAN GEOFFREY D ET AL, "A deep learning genome-mining strategy for biosynthetic gene cluster prediction", NUCLEIC ACIDS RESEARCH, GB, vol. 47, no. 18, doi:10.1093/nar/gkz654, ISSN 0305-1048, (20190810), pages e110 - e110, URL: http://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkz654/29116167/gkz654.pdf, XP093070866 [I] 1-18 * abstract * * page 2, column 1, paragraph 1 - column 2 * * page 11, column 1, paragraph 4 * * page 9, column 2, paragraph 3 - page 10, column 1, paragraph 1 *

DOI:   http://dx.doi.org/10.1093/nar/gkz654
 [A]  - Anonymous, "N50, L50, and related statistics - Wikipedia", (20190712), URL: https://en.wikipedia.org/w/index.php?title=N50,_L50,_and_related_statistics&oldid=905977462, (20240129), XP093124687 [A] 1-18 * page 1, paragraph 4 * * page 3, paragraph 2 *
 [A]  - TILMANN WEBER ET AL, "antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters", NUCLEIC ACIDS RESEARCH, GB, (20150506), vol. 43, no. W1, doi:10.1093/nar/gkv437, ISSN 0305-1048, pages W237 - W243, XP055534060 [A] 1-18 * page W238, column 2, paragraph 1 *

DOI:   http://dx.doi.org/10.1093/nar/gkv437
 [A]  - BLIN KAI ET AL, "antiSMASH 4.0-improvements in chemistry prediction and gene cluster boundary identification", NUCLEIC ACIDS RESEARCH, GB, vol. 45, no. W1, doi:10.1093/nar/gkx319, ISSN 0305-1048, (20170428), pages W36 - W41, URL: https://academic.oup.com/nar/article-pdf/45/W1/W36/18137297/gkx319.pdf, XP055852808 [A] 1-18 * page W38, column 1, paragraph 2 *

DOI:   http://dx.doi.org/10.1093/nar/gkx319
 [A]  - BRADY SEAN F ET AL, "Metagenomic approaches to natural products from free-living and symbiotic organisms", NATURAL PRODUCT REPORTS, vol. 26, no. 11, doi:10.1039/B817078A, ISSN 0265-0568, (20090916), pages 1488 - 1503, (20091116), XP009148461 [A] 1-18 * abstract *

DOI:   http://dx.doi.org/10.1039/B817078A
International search[A]US2003187587  (SWINDELLS MARK [GB], et al) [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *;
 [A]US2010222237  (STEMMER WILLEM P C [US], et al) [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *;
 [A]US2011257023  (GUSTAFSSON CLAES [US], et al) [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *;
 [A]US2013124574  (BRETTIN THOMAS S [US], et al) [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *;
 [X]US2017159045  (SERBER ZACH [US], et al) [X] 1-35, 56-60, 75-77, 110-112, 145-151, 156-161, 168, 173-179, 181-183, 204-209 * entire document *;
 [A]  - JASWAL et al., "Metagenomics-Guided Survey, Isolation, and Characterization of Uranium Resistant Microbiota from the Savannah River Site, USA", Genes, vol. 10, no. 5, (20190500), page 325, (20190428), XP055848228 [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *

DOI:   http://dx.doi.org/10.3390/genes10050325
 [A]  - PAIO et al., "Identification of Novel Biomass-Degrading Enzymes From Genomic Dark Matter: Populating Genomic Sequence Space With Functional Annotation", Biotechnology and bioengineering, (20140412), vol. 111, no. 8, pages 1550 - 65, XP055848227 [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *
 [A]  - SIMEONIDIS et al., "Genome-Scale Modeling for Metabolic Engineering", Microbiology and Biotechnology, (20150301), vol. 42, no. Issue 3, pages 327 - 338, XP035446283 [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * . (01.03.2015) entire document *

DOI:   http://dx.doi.org/10.1007/s10295-014-1576-3
 [A]  - YANG et al., "WholeTranscriptome Analysis and Gene Deletion to Understand the Chloramphenicol Resistance Mechanism and Develop a Screening Method for Homologous Recombination in Myxococcus xanthus", Microbial cell factories, (20190710), vol. 18, no. 1, pages 1 - 5, XP055848224 [A] 1-35, 56-60, 75-77,110-112, 145-151,156-161, 168, 173-179,181-183, 204-209 * entire document *

DOI:   http://dx.doi.org/10.1186/s12934-019-1172-3
The EPO accepts no responsibility for the accuracy of data originating from other authorities; in particular, it does not guarantee that it is complete, up to date or fit for specific purposes.