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Extract from the Register of European Patents

EP About this file: EP4217364

EP4217364 - METHODS OF IDENTIFYING PROTEIN BINDING SITES ON RNA [Right-click to bookmark this link]
StatusRequest for examination was made
Status updated on  30.06.2023
Database last updated on 12.11.2024
FormerThe international publication has been made
Status updated on  02.04.2022
Most recent event   Tooltip28.09.2024New entry: Renewal fee paid 
Applicant(s)For all designated states
The Regents of the University of California
1111 Franklin Street, 5th Floor
Oakland, CA 94607-5200 / US
[2023/31]
Inventor(s)01 / YEO, Eugene
La Jolla, CA 92093 / US
02 / CORLEY, Meredith
La Jolla, CA 92093 / US
 [2023/31]
Representative(s)Fish & Richardson P.C.
Highlight Business Towers
Mies-van-der-Rohe-Straße 8
80807 München / DE
[2023/31]
Application number, filing date21873516.524.09.2021
[2023/31]
WO2021US51952
Priority number, dateUS202063083393P25.09.2020         Original published format: US 202063083393 P
[2023/31]
Filing languageEN
Procedural languageEN
PublicationType: A1 Application with search report
No.:WO2022067036
Date:31.03.2022
Language:EN
[2022/13]
Type: A1 Application with search report 
No.:EP4217364
Date:02.08.2023
Language:EN
The application published by WIPO in one of the EPO official languages on 31.03.2022 takes the place of the publication of the European patent application.
[2023/31]
Search report(s)International search report - published on:US31.03.2022
(Supplementary) European search report - dispatched on:EP26.02.2024
ClassificationIPC:C12Q1/6806, C12Q1/6869, C07H21/02, C12N15/09, C12N15/10, C12P19/34
[2024/13]
CPC:
C12Q1/6806 (EP,US); C07K16/44 (US); C12N15/1093 (EP);
C12P19/34 (EP); C12Q1/6869 (EP); C12Y304/00 (EP)
C-Set:
C12N15/1093, C12Q2521/537, C12Q2522/101, C12Q2523/101, C12Q2527/125, C12Q2535/122 (EP);
C12Q1/6806, C12Q2522/101, C12Q2523/101, C12Q2527/125, C12Q2535/122 (EP);
C12Q1/6869, C12Q2522/101, C12Q2523/101, C12Q2527/125 (EP)
Former IPC [2023/31]C07H21/02, C12N15/09, C12N15/10, C12P19/34, C12Q1/68, C12Q1/6806
Designated contracting statesAL,   AT,   BE,   BG,   CH,   CY,   CZ,   DE,   DK,   EE,   ES,   FI,   FR,   GB,   GR,   HR,   HU,   IE,   IS,   IT,   LI,   LT,   LU,   LV,   MC,   MK,   MT,   NL,   NO,   PL,   PT,   RO,   RS,   SE,   SI,   SK,   SM,   TR [2023/31]
TitleGerman:VERFAHREN ZUR IDENTIFIZIERUNG VON PROTEINBINDUNGSSTELLEN AUF RNA[2023/31]
English:METHODS OF IDENTIFYING PROTEIN BINDING SITES ON RNA[2023/31]
French:PROCÉDÉ D'IDENTIFICATION DE SITES DE LIAISON À DES PROTÉINES SUR L'ARN[2023/31]
Entry into regional phase25.04.2023National basic fee paid 
25.04.2023Search fee paid 
25.04.2023Designation fee(s) paid 
25.04.2023Examination fee paid 
Examination procedure25.04.2023Examination requested  [2023/31]
16.09.2024Amendment by applicant (claims and/or description)
16.09.2024Date on which the examining division has become responsible
Fees paidRenewal fee
25.04.2023Renewal fee patent year 03
27.09.2024Renewal fee patent year 04
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Patent Court		 See the Register of the Unified Patent Court for opt-out data
Responsibility for the accuracy, completeness or quality of the data displayed under the link provided lies entirely with the Unified Patent Court.
Documents cited:Search[XY]  - VAN NOSTRAND ERIC L ET AL, "Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP)", NATURE METHODS, New York, vol. 13, no. 6, doi:10.1038/nmeth.3810, ISSN 1548-7091, (20160601), pages 508 - 514, URL: https://www.nature.com/articles/nmeth.3810.pdf, XP055873058 [X] 1,3,6,8-10,12-14 * abstract * * figure 1 * * last 2 pages * [Y] 2,4,5,7,11,15

DOI:   http://dx.doi.org/10.1038/nmeth.3810
 [XY]  - VAN NOSTRAND ERIC L ET AL, "Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP) - suppl material", NATURE METHODS, New York, vol. 13, no. 6, doi:10.1038/nmeth.3810, ISSN 1548-7091, (20160328), pages 508 - 514, URL: https://www.nature.com/articles/nmeth.3810, XP093128197 [X] 1,3,6,8-10,12-14 * figures 2,3 * * page 3 - page 16 * [Y] 2,4,5,7,11,15

DOI:   http://dx.doi.org/10.1038/nmeth.3810
 [Y]  - SMOLA MATTHEW J. ET AL, "Detection of RNA-Protein Interactions in Living Cells with SHAPE", BIOCHEMISTRY, (20151111), vol. 54, no. 46, doi:10.1021/acs.biochem.5b00977, ISSN 0006-2960, pages 6867 - 6875, XP093127381 [Y] 2,4,5,7,11,15 * abstract * * figure 1 * * page 6869, column l, paragraph 1 - page 6870, column r, paragraph 2 *

DOI:   http://dx.doi.org/10.1021/acs.biochem.5b00977
 [Y]  - SPITALE ROBERT C ET AL, "RNA SHAPE analysis in living cells", NATURE CHEMICAL BIOLOGY, NATURE PUBLISHING GROUP US, NEW YORK, vol. 9, no. 1, doi:10.1038/NCHEMBIO.1131, ISSN 1552-4450, (20121125), pages 18 - 20, (20121125), XP037548208 [Y] 2,4,5,7,11,15 * the whole document *

DOI:   http://dx.doi.org/10.1038/nchembio.1131
 [Y]  - Spitale Robert C ET AL, "Supplementary Information - RNA SHAPE analysis in living cells", Nature Chemical Biology, doi:10.1038/nchembio.1131, (20121125), URL: https://static-content.springer.com/esm/art%3A10.1038%2Fnchembio.1131/MediaObjects/41589_2013_BFnchembio1131_MOESM294_ESM.pdf, (20230308), XP093029894 [Y] 2,4,5,7,11,15 * the whole document *

DOI:   http://dx.doi.org/10.1038/nchembio.1131
 [XP]  - CORLEY MEREDITH ET AL, "Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces", MOLECULAR CELL, ELSEVIER, AMSTERDAM, NL, vol. 80, no. 5, doi:10.1016/J.MOLCEL.2020.11.014, ISSN 1097-2765, (20201125), page 903, (20201125), XP086383987 [XP] 1-15 * the whole document *

DOI:   http://dx.doi.org/10.1016/j.molcel.2020.11.014
International search[XY]US2011287412  (LANDTHALER MARCUS [DE], et al) [X] 1-3, 26, 27, 39-41 * entire document * [Y] 15, 42, 43;
 [XY]US2014378316  (DARNELL ROBERT [US], et al) [X] 14, 16 * entire document * [Y] 15;
 [E]WO2021202542  (UNIV CALIFORNIA [US]) [E] 1-3, 14-16, 26, 27, 39-43* entire document *;
 [Y]  - WANG et al., "Mechanistic studies of a small-molecule modulator of SMN2 splicing", PNAS, (20180515), vol. 115, doi:10.1073/pnas.1800260115, pages E4604 - E4612, XP055770082 [Y] 42, 43 * . entire document *

DOI:   http://dx.doi.org/10.1073/pnas.1800260115
 [PA]  - Corley Meredith; Flynn Ryan A.; Lee Byron; Blue Steven M.; Chang Howard Y.; Yeo Gene W., "Footprinting SHAPE-eCLIP Reveals Transcriptome-wide Hydrogen Bonds at RNA-Protein Interfaces", Molecular Cell, ELSEVIER, AMSTERDAM, NL, AMSTERDAM, NL, (20201125), vol. 80, no. 5, doi:10.1016/j.molcel.2020.11.014, ISSN 1097-2765, page 903, XP086383987 [PA] 1-3, 14-16, 26, 27, 39-43 * . entire document *

DOI:   http://dx.doi.org/10.1016/j.molcel.2020.11.014
The EPO accepts no responsibility for the accuracy of data originating from other authorities; in particular, it does not guarantee that it is complete, up to date or fit for specific purposes.